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Etn/get settings and events #44

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Etn/get settings and events #44

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ed-nykaza
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@jameno this is about 2/3 of the way done

@ed-nykaza ed-nykaza requested a review from jameno January 11, 2019 23:15
@ed-nykaza
add logic for missing data
73e6228
@ed-nykaza
get actual basal rates and scheduled basal rates
71f9000
@ed-nykaza
changes related to time
eb7a77d
@ed-nykaza
expand correction target cases and auto mode basal rates
aa00704
@ed-nykaza
handle insulinSensitivities and carbRatios schedules
88682af
@ed-nykaza
refactor correction target
9d1349f
@ed-nykaza
handle multiple correctionTargets
307bb2e
@ed-nykaza
add cgm data
2190b24
@ed-nykaza
make an actual basal rate delivered df
1050b63
@ed-nykaza
add in extended boluses to the actual basals delivered
53cfe1f
@ed-nykaza
get day level summary stats by age and years living with (ylw)
3258b1b
@ed-nykaza
require pump and cgm data for this analysis
5cf9cdc
@ed-nykaza
remove dependence on tidals
75b78a2
@ed-nykaza
edge case where the active schedule is a float (convert back to string)
28a4654
@ed-nykaza
save all preprocessed data
2ceaf15
@ed-nykaza
calc local time and save settings and events
ba45b20
@ed-nykaza
add isf day stats
334f19b
@ed-nykaza
calculate day summaries for settings (isf, cir, ct, and sbr)
7076aba
@ed-nykaza ed-nykaza force-pushed the etn/get-settings-and-events branch from f81f4d7 to b015a1e Compare January 29, 2019 10:57
@ed-nykaza
add total daily dose and correct basals that extend past midnight
5597a85
@ed-nykaza
add cgm and episode stats
99c0de7
@ed-nykaza
fix return typo
6423aee
@ed-nykaza
turn the try-except back on for run on AWS
6934f7c
@ed-nykaza
remove input argument bypass
0f8dd25
@ed-nykaza
gather and combine files for analysis
7d183b0
@ed-nykaza
pumpEvents no longer exists, change to basal and bolus Events
f78f128
@ed-nykaza
add dayData back to output
ec8b7cb
@ed-nykaza
update packages to include allow static figure recreate with plotly
500c124
@ed-nykaza
add a work in progress (wip) to gitignore
f5f146e
@ed-nykaza
code used to generate summary tables
effb6ad
@ed-nykaza
exclude parser output in gitignore
1c9f0fc
@ed-nykaza
change location of data path and file name
7542bf1
@ed-nykaza
change figure output path
07ccf94
@ed-nykaza
ignore local plotly plot
a8048ca
@ed-nykaza
plots of isf and tdd (local only)
795d642 
needs cleaning before pushing to repository
@ed-nykaza
update environment
c709afd
@ed-nykaza
plots using jos age and ylw groups
7b4d0f9
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@jameno jameno Awaiting requested review from jameno

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