From 51b2a8d57cf7bf41bc701e0a56db04b50b5a9c3b Mon Sep 17 00:00:00 2001 From: Umberto Lupo <46537483+ulupo@users.noreply.github.com> Date: Thu, 8 Jul 2021 21:23:53 +0200 Subject: [PATCH] Bump version to 0.5.0 and create release notes (#593) * Bump version to 0.5.0 and create release notes * Update ccache --- azure-pipelines.yml | 4 ++-- doc/library.rst | 4 ++-- doc/release.rst | 39 +++++++++++++++++++++++++++++++++++++++ doc/update_versions.py | 3 ++- doc/versions | 1 + gtda/_version.py | 2 +- setup.py | 2 +- 7 files changed, 48 insertions(+), 7 deletions(-) diff --git a/azure-pipelines.yml b/azure-pipelines.yml index db00842bd..6cb7e1762 100644 --- a/azure-pipelines.yml +++ b/azure-pipelines.yml @@ -46,7 +46,7 @@ jobs: - task: Cache@2 inputs: - key: '"ccache-wheels-v2021.06.30" | $(Agent.OS) | "$(python.version)"' + key: '"ccache-wheels-v2021.07.08" | $(Agent.OS) | "$(python.version)"' path: $(CCACHE_DIR) displayName: ccache @@ -146,7 +146,7 @@ jobs: - task: Cache@2 inputs: - key: '"ccache-v2021.06.30" | $(Agent.OS) | "$(python.version)"' + key: '"ccache-v2021.07.08" | $(Agent.OS) | "$(python.version)"' path: $(CCACHE_DIR) displayName: ccache diff --git a/doc/library.rst b/doc/library.rst index af41c94c9..dbed41623 100644 --- a/doc/library.rst +++ b/doc/library.rst @@ -124,5 +124,5 @@ What's new .. include:: release.rst - :start-after: Release 0.4.0 - :end-before: Release 0.3.1 + :start-after: Release 0.5.0 + :end-before: Release 0.4.0 diff --git a/doc/release.rst b/doc/release.rst index 20935b7ad..4d6e6c111 100644 --- a/doc/release.rst +++ b/doc/release.rst @@ -4,6 +4,45 @@ Release Notes .. _stable: +************* +Release 0.5.0 +************* + +Major Features and Improvements +=============================== + +- An object-oriented API for interactive plotting of Mapper graphs has been added with the ``MapperInteractivePlotter`` (`#586 `_). This is intended to supersede ``plot_interactive_mapper`` graph as it allows for inspection of the current state of the objects change by interactivity. See also "Backwards-Incompatible Changes" below. +- Further citations have been added to the mathematical glossary (`#564 `_). + +Bug Fixes +========= + +- A bug preventing ``EuclideanCechPersistence`` from working correctly on point clouds in more than 2 dimensions has been fixed (`#588 `_). +- A validation bug preventing ``VietorisRipsPersistence`` and ``WeightedRipsPersistence`` from accepting non-empty dictionaries as ``metric_params`` has been fixed (`#590 `_). +- A bug causing an exception to be raised when ``node_color_statistic`` was passed as a numpy array in ``plot_static_mapper_graph`` has been fixed (`#576 `_). + +Backwards-Incompatible Changes +============================== + +- A major change to the behaviour of the (static and interactive) Mapper plotting functions ``plot_static_mapper_graph`` and ``plot_interactive_mapper_graph`` was introduced in `#584 `_. The new ``MapperInteractivePlotter`` class (see "Major Features and Improvements" above) also follows this new API. The main changes are as follows: + + - ``color_by_columns_dropdown`` has been eliminated. + - ``color_variable`` has been renamed to ``color_features`` (but cannot be an array). + - An additional keyword argument ``color_data`` has been added to more clearly separate the input ``data`` to the Mapper pipeline from the data to be used for coloring. + - ``node_color_statistic`` is now applied column by column -- previously it could end up being applied to 2d arrays as a whole. + - The defaults for color-related arguments lead to index values instead of the mean of the data. + +- The default for ``weight_params`` in ``WeightedRipsPersistence`` is now the empty dictionary, and ``None`` is no longer allowed (`#595 `_). + +Thanks to our Contributors +========================== + +This release contains contributions from many people: + +Umberto Lupo, Wojciech Reise, Julian Burella Pérez, Sean Law, Anibal Medina-Mardones, and Lewis Tunstall + +We are also grateful to all who filed issues or helped resolve them, asked and answered questions, and were part of inspiring discussions. + ************* Release 0.4.0 ************* diff --git a/doc/update_versions.py b/doc/update_versions.py index 4e0de7098..4bfd5792c 100644 --- a/doc/update_versions.py +++ b/doc/update_versions.py @@ -56,7 +56,8 @@ def process_file(file_name, versions): import os from glob import glob path = sys.argv[1] - file_names = [y for x in os.walk(path) for y in glob(os.path.join(x[0], '*.html'))] + file_names = [y for x in os.walk(path) + for y in glob(os.path.join(x[0], '*.html'))] print(file_names) with open('versions', 'r') as f: diff --git a/doc/versions b/doc/versions index 22274e79d..095c0fbba 100644 --- a/doc/versions +++ b/doc/versions @@ -4,4 +4,5 @@ ./0.3.0 ./0.3.1 ./0.4.0 +./0.5.0 ./latest diff --git a/gtda/_version.py b/gtda/_version.py index 0f0dbcbf5..a5caaa708 100644 --- a/gtda/_version.py +++ b/gtda/_version.py @@ -19,4 +19,4 @@ # 'X.Y.dev0' is the canonical version of 'X.Y.dev' # -__version__ = "0.4.0" +__version__ = "0.5.0" diff --git a/setup.py b/setup.py index b51427e3c..1fedb33db 100755 --- a/setup.py +++ b/setup.py @@ -29,7 +29,7 @@ MAINTAINER_EMAIL = "maintainers@giotto.ai" URL = "https://github.com/giotto-ai/giotto-tda" LICENSE = "GNU AGPLv3" -DOWNLOAD_URL = "https://github.com/giotto-ai/giotto-tda/tarball/v0.4.0" +DOWNLOAD_URL = "https://github.com/giotto-ai/giotto-tda/tarball/v0.5.0" VERSION = __version__ # noqa CLASSIFIERS = ["Intended Audience :: Science/Research", "Intended Audience :: Developers",